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Istvan Simon

Dictionary
Publications
Publications

Articles

1.   Kozma D, Simon I and Tusnády GE (2013) [23203988]
  PDBTM: Protein Data Bank of transmembrane proteins after 8 years.
  Nucleic Acids Res 41, D524-9
2.   Kozma D, Simon I and Tusnády GE (2012) [22669913]
  CMWeb: an interactive on-line tool for analysing residue-residue contacts and contact prediction methods.
  Nucleic Acids Res 40, W329-33
3.   Mészáros B, Dosztányi Z and Simon I (2012) [23056474]
  Disordered Binding Regions and Linear Motifs-Bridging the Gap between Two Models of Molecular Recognition.
  PLoS ONE 7, e46829
4.   Pajkos M, Mészáros B, Simon I and Dosztányi Z (2012) [21918772]
  Is there a biological cost of protein disorder? Analysis of cancer-associated mutations.
  Mol Biosyst 8, 296-307
5.   Bernstein N, Várnai C, Solt I, Winfield SA, Payne MC, Simon I, Fuxreiter M and Csányi G (2012) [22089416]
  QM/MM simulation of liquid water with an adaptive quantum region.
  Phys Chem Chem Phys 14, 646-656
6.   Di Paolo ML, Lunelli M, Fuxreiter M, Rigo A, Simon I and Scarpa M (2011) [21294844]
  Active site residue involvement in mono- or di-amine oxidation catalysed by pea seedling amine oxidase.
  FEBS J 278, 1232-1243
7.   Fuxreiter M, Simon I and Bondos S (2011) [21620710]
  Dynamic protein-DNA recognition: beyond what can be seen.
  Trends Biochem Sci 36, 415-423
8.   Pécsi I, Szabó JE, Adams SD, Simon I, Sellers JR, Vértessy BG and Tóth J (2011) [21831832]
  Nucleotide pyrophosphatase employs a P-loop-like motif to enhance catalytic power and NDP/NTP discrimination.
  P Natl Acad Sci Usa 108, 14437-14442
9.   Mészáros B, Tóth J, Vértessy BG, Dosztányi Z and Simon I (2011) [21814507]
  Proteins with Complex Architecture as Potential Targets for Drug Design: A Case Study of Mycobacterium tuberculosis.
  PLoS Comput Biol 7, e1002118
10.   Mészáros B, Simon I and Dosztányi Z (2011) [21572179]
  The expanding view of protein-protein interactions: complexes involving intrinsically disordered proteins.
  Phys Biol 8, 035003
11.   Dosztányi Z, Mészáros B and Simon I (2010) [20007729]
  Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins.
  Brief Bioinform 11, 225-243
12.   Tusnády GE and Simon I (2010) [20887261]
  Topology prediction of helical transmembrane proteins: how far have we reached?
  Curr Protein Pept Sc 11, 550-61
13.   Dosztányi Z, Mészáros B and Simon I (2009) [19717576]
  ANCHOR: web server for predicting protein binding regions in disordered proteins.
  Bioinformatics 25, 2745-6
14.   Tompa P, Fuxreiter M, Oldfield CJ, Simon I, Dunker AK and Uversky VN (2009) [19260013]
  Close encounters of the third kind: disordered domains and the interactions of proteins.
  Bioessays 31, 328-35
15.   Tóth-Petróczy A, Simon I, Fuxreiter M and Levy Y (2009) [19919153]
  Disordered tails of homeodomains facilitate DNA recognition by providing a trade-off between folding and specific binding.
  J Am Chem Soc 131, 15084-5
16.   Madrid-Aliste CJ, Dybas JM, Angeletti RH, Weiss LM, Kim K, Simon I and Fiser A (2009) [19159464]
  EPIC-DB: a proteomics database for studying Apicomplexan organisms.
  BMC Genomics 10, 38
17.   Solt I, Kulhánek P, Simon I, Winfield S, Payne MC, Csányi G and Fuxreiter M (2009) [19341253]
  Evaluating Boundary Dependent Errors in QM/MM Simulations.
  J Phys Chem B 113, 5728-5735
18.   Mészáros B, Simon I and Dosztányi Z (2009) [19412530]
  Prediction of protein binding regions in disordered proteins.
  PLoS Comput Biol 5, e1000376
19.   Mones L, Kulhánek P, Simon I, Laio A and Fuxreiter M (2009) [19432459]
  The Energy Gap as a Universal Reaction Coordinate for the Simulation of Chemical Reactions.
  J Phys Chem B 113, 7867-7873
20.   Toth-Petroczy A, Meszaros B, Simon I, Dunker AK, Uversky VN and Fuxreiter M (2008) [-2147483648]
  Assessing Conservation of Disordered Regions in Proteins
  The Open Proteomics Journal 1, 46-53
21.   Tóth-Petróczy Á, Oldfield CJ, Simon I, Takagi Y, Dunker AK, Uversky VN and Fuxreiter M (2008) [19096501]
  Malleable machines in transcription regulation: the mediator complex.
  PLoS Comput Biol 4, e1000243
22.   Fuxreiter M, Tompa P, Simon I, Uversky VN, Hansen JC and Asturias FJ (2008) [19008886]
  Malleable machines take shape in eukaryotic transcriptional regulation.
  Nat Chem Biol 4, 728-37
23.   Csosz E, Bagossi P, Nagy Z, Dosztányi Z, Simon I and Fésüs L (2008) [18761350]
  Substrate Preference of Transglutaminase 2 Revealed by Logistic Regression Analysis and Intrinsic Disorder Examination.
  J Mol Biol 383, 390-402
24.   Tusnády GE, Kalmár L and Simon I (2008) [17921502]
  TOPDB: topology data bank of transmembrane proteins.
  Nucleic Acids Res 36, D234-9
25.   Tusnády GE, Kalmár L, Hegyi H, Tompa P and Simon I (2008) [18434342]
  TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
  Bioinformatics 24, 1469-70
26.   Chuluunbaatar T, Ivanenko-Johnston T, Fuxreiter M, Meleshko R, Raskó T, Simon I, Heitman J and Kiss A (2007) [17442645]
  An EcoRI-RsrI chimeric restriction endonuclease retains parental sequence specificity.
  Bba-proteins Proteom 1774, 583-94
27.   Solt I, Simon I, Császár AG and Fuxreiter M (2007) [17497910]
  Electrostatic versus nonelectrostatic effects in DNA sequence discrimination by divalent ions Mg2+ and Mn2+.
  J Phys Chem B 111, 6272-9
28.   Németh-Pongrácz V, Barabás O, Fuxreiter M, Simon I, Pichová I, Rumlová M, Zábranská H, Svergun D, Petoukhov M, Harmat V, Klement E, Hunyadi-Gulyás E, Medzihradszky KF, Kónya E and Vértessy BG (2007) [17169987]
  Flexible segments modulate co-folding of dUTPase and nucleocapsid proteins.
  Nucleic Acids Res 35, 495-505
29.   Polgár T, Magyar C, Simon I and Keserű GM (2007) [17944457]
  Impact of Ligand Protonation on Virtual Screening against beta-Secretase (BACE1).
  J Chem Inf Model 47, 2366-73
30.   Fuxreiter M, Tompa P and Simon I (2007) [17387114]
  Local structural disorder imparts plasticity on linear motifs.
  Bioinformatics 23, 950-6
31.   Mones L, Simon I and Fuxreiter M (2007) [17214552]
  Metal-binding sites at the active site of restriction endonuclease BamHI can conform to a one-ion mechanism.
  Biol Chem 388, 73-8
32.   Mészáros B, Tompa P, Simon I and Dosztányi Z (2007) [17681540]
  Molecular principles of the interactions of disordered proteins.
  J Mol Biol 372, 549-61
33.   Dosztányi Z, Sándor M, Tompa P and Simon I (2007) [17430197]
  Prediction of protein disorder at the domain level.
  Curr Protein Pept Sc 8, 161-71
34.   Mones L, Kulhánek P, Florián J, Simon I and Fuxreiter M (2007) [18020376]
  Probing the two-metal ion mechanism in the restriction endonuclease BamHI.
  Biochemistry-us 46, 14514-23
35.   Csizmók V, Dosztányi Z, Simon I and Tompa P (2007) [17430198]
  Towards proteomic approaches for the identification of structural disorder.
  Curr Protein Pept Sc 8, 173-9
36.   Dosztányi Z, Chen J, Dunker AK, Simon I and Tompa P (2006) [17081050]
  Disorder and sequence repeats in hub proteins and their implications for network evolution.
  J Proteome Res 5, 2985-95
37.   Tusnády GE, Sarkadi B, Simon I and Váradi A (2006) [16337630]
  Membrane topology of human ABC proteins.
  FEBS Lett 580, 1017-22
38.   Sakajiri T, Kikuchi T, Simon I, Uchida K, Yamamura T, Ishii T and Yajima H (2006) [-100002908]
  Molecular dynamics approach to study the discrepancies in the thermal behavior of amylose and chitosan conformations.
  J Mol Struc-theochem 764, 133-140
39.   Solt I, Magyar C, Simon I, Tompa P and Fuxreiter M (2006) [16761278]
  Phosphorylation-induced transient intrinsic structure in the kinase-inducible domain of CREB facilitates its recognition by the KIX domain of CBP.
  Proteins 64, 749-57
40.   Tompa P, Dosztányi Z and Simon I (2006) [16889422]
  Prevalent structural disorder in E. coli and S. cerevisiae proteomes.
  J Proteome Res 5, 1996-2000
41.   Arányi T, Váradi A, Simon I and Tusnády GE (2006) [17022803]
  The BiSearch web server.
  BMC Bioinformatics 7, 431
42.   Tusnády GE, Simon I, Váradi A and Arányi T (2005) [15653630]
  BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes.
  Nucleic Acids Res 33, e9
43.   Fuxreiter M, Magyar C, Juhász T, Szeltner Z, Polgár L and Simon I (2005) [15971204]
  Flexibility of prolyl oligopeptidase: molecular dynamics and molecular framework analysis of the potential substrate pathways.
  Proteins 60, 504-12
44.   Fuxreiter M, Mezei M, Simon I and Osman R (2005) [15894630]
  Interfacial water as a hydration fingerprint in the noncognate complex of BamHI.
  Biophys J 89, 903-11
45.   Dosztányi Z, Csizmók V, Tompa P and Simon I (2005) [15955779]
  IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.
  Bioinformatics 21, 3433-4
46.   Tusnády GE, Dosztányi Z and Simon I (2005) [15608195]
  PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank.
  Nucleic Acids Res 33, D275-8
47.   Magyar C, Gromiha MM, Pujadas G, Tusnády GE and Simon I (2005) [15980477]
  SRide: a server for identifying stabilizing residues in proteins.
  Nucleic Acids Res 33, W303-5
48.   Dosztányi Z, Csizmók V, Tompa P and Simon I (2005) [15769473]
  The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.
  J Mol Biol 347, 827-39
49.   Tusnády GE, Dosztányi Z and Simon I (2005) [15539454]
  TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
  Bioinformatics 21, 1276-7
50.   Magyar C, Tüdős É and Simon I (2004) [15178329]
  Functionally and structurally relevant residues of enzymes: are they segregated or overlapping?
  FEBS Lett 567, 239-42
51.   Gromiha MM, Pujadas G, Magyar C, Selvaraj S and Simon I (2004) [15048825]
  Locating the stabilizing residues in (alpha/beta)8 barrel proteins based on hydrophobicity, long-range interactions, and sequence conservation.
  Proteins 55, 316-29
52.   Tüdős É, Fiser A, Simon Á, Dosztányi Z, Fuxreiter M, Magyar C and Simon I (2004) [15032510]
  Noncovalent cross-links in context with other structural and functional elements of proteins.
  J Chem Inf Comput Sci 44, 347-51
53.   Fuxreiter M, Simon I, Friedrich P and Tompa P (2004) [15111064]
  Preformed structural elements feature in partner recognition by intrinsically unstructured proteins.
  J Mol Biol 338, 1015-26
54.   Cserző M, Eisenhaber F, Eisenhaber B and Simon I (2004) [14693825]
  TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter.
  Bioinformatics 20, 136-7
55.   Tusnády GE, Dosztányi Z and Simon I (2004) [15180935]
  Transmembrane proteins in the Protein Data Bank: identification and classification.
  Bioinformatics 20, 2964-72
56.   Fuxreiter M, Osman R and Simon I (2003) [-100002800]
  Computational approaches to restrictionendonucleases.
  J Mol Struc-theochem 666-667, 469-479
57.   Gardy JL, Spencer C, Wang K, Ester M, Tusnády GE, Simon I, Hua S, deFays K, Lambert C, Nakai K and Brinkman FS (2003) [12824378]
  PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria.
  Nucleic Acids Res 31, 3613-7
58.   Dosztányi Z, Magyar C, Tusnády GE and Simon I (2003) [12724305]
  SCide: identification of stabilization centers in proteins.
  Bioinformatics 19, 899-900
59.   Dosztányi Z, Magyar C, Tusnády GE, Cserző M, Fiser A and Simon I (2003) [12824327]
  Servers for sequence-structure relationship analysis and prediction.
  Nucleic Acids Res 31, 3359-63
60.   Simon Á, Simon I and Rajnavölgyi É (2002) [11858823]
  Modeling MHC class II molecules and their bound peptides as expressed at the cell surface.
  Mol Immunol 38, 681-7
61.   Cserző M, Eisenhaber F, Eisenhaber B and Simon I (2002) [12456873]
  On filtering false positive transmembrane protein predictions.
  Protein Eng 15, 745-52
62.   Fiser A and Simon I (2002) [12078485]
  Predicting redox state of cysteines in proteins.
  Method Enzymol 353, 10-21
63.   Fuxreiter M and Simon I (2002) [12142452]
  Protein stability indicates divergent evolution of PD-(D/E)XK type II restriction endonucleases.
  Protein Sci 11, 1978-83
64.   Fuxreiter M, Luo N, Jedlovszky P, Simon I and Osman R (2002) [12417196]
  Role of base flipping in specific recognition of damaged DNA by repair enzymes.
  J Mol Biol 323, 823-34
65.   Fuxreiter M and Simon I (2002) [12112699]
  Role of stabilization centers in 4 helix bundle proteins.
  Proteins 48, 320-6
66.   Tompa P, Tusnády GE, Friedrich P and Simon I (2002) [11916832]
  The role of dimerization in prion replication.
  Biophys J 82, 1711-8
67.   Mehler EL, Fuxreiter M, Simon I and Garcia-Moreno EB (2002) [12112696]
  The role of hydrophobic microenvironments in modulating pKa shifts in proteins.
  Proteins 48, 283-92
68.   Simon I, Fiser A and Tusnády GE (2001) [11690649]
  Predicting protein conformation by statistical methods.
  Biochimica Et Biophysica Acta-protein Structure And Molecular Enzymology 1549, 123-36
69.   Tompa P, Tusnády GE, Cserző M and Simon I (2001) [11287647]
  Prion protein: evolution caught en route.
  P Natl Acad Sci Usa 98, 4431-6
70.   Simon Á, Dosztányi Z, Magyar C, Szirtes G, Rajnavölgyi E and Simon I (2001) [-100002666]
  Stabilization centers and protein stability.
  Theor Chem Acc 106, 121-127
71.   Tusnády GE and Simon I (2001) [11590105]
  The HMMTOP transmembrane topology prediction server.
  Bioinformatics 17, 849-50
72.   Tusnády GE and Simon I (2001) [11277724]
  Topology of membrane proteins.
  J Chem Inf Comput Sci 41, 364-8
73.   Rajnavölgyi É, Nagy N, Thuresson B, Dosztányi Z, Simon Á, Simon I, Karr RW, Ernberg I, Klein E and Falk KI (2000) [10700463]
  A repetitive sequence of Epstein-Barr virus nuclear antigen 6 comprises overlapping T cell epitopes which induce HLA-DR-restricted CD4(+) T lymphocytes.
  Int Immunol 12, 281-93
74.   Simon Á, Dosztányi Z, Rajnavölgyi É and Simon I (2000) [11053110]
  Function-related regulation of the stability of MHC proteins.
  Biophys J 79, 2305-13
75.   Gogolák P, Simon Á, Horváth A, Réthi B, Simon I, Berkics K, Rajnavölgyi É and Tóth GK (2000) [10733926]
  Mapping of a protective helper T cell epitope of human influenza A virus hemagglutinin.
  Biochem Bioph Res Co 270, 190-8
76.   Fiser A and Simon I (2000) [10869018]
  Predicting the oxidation state of cysteines by multiple sequence alignment.
  Bioinformatics 16, 251-6
77.   Dosztányi Z and Simon I (1999) [-100002665]
  Stabilization centers in various proteins.
  Theor Chem Acc 101, 27-32
78.   Tusnády GE and Simon I (1998) [9769220]
  Principles governing amino acid composition of integral membrane proteins: application to topology prediction.
  J Mol Biol 283, 489-506
79.   Munteanu MG, Vlahovicek K, Parthasarathy S, Simon I and Pongor S (1998) [9787640]
  Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena.
  Trends Biochem Sci 23, 341-7
80.   Gugolya Z, Dosztányi Z and Simon I (1997) [9094738]
  Interresidue interactions in protein classes.
  Proteins 27, 360-6
81.   Cserző M, Wallin E, Simon I, von Heijne G and Elofsson A (1997) [9278280]
  Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method.
  Protein Eng 10, 673-6
82.   Dosztányi Z, Fiser A and Simon I (1997) [9325115]
  Stabilization centers in proteins: identification, characterization and predictions.
  J Mol Biol 272, 597-612
83.   Gromiha MM, Munteanu MG, Simon I and Pongor S (1997) [9606078]
  The role of DNA bending in Cro protein-DNA interactions.
  Biophys Chem 69, 153-60
84.   Fiser A, Dosztányi Z and Simon I (1997) [9183535]
  The role of long-range interactions in defining the secondary structure of proteins is overestimated.
  Comput Appl Biosci. 13, 297-301
85.   Fiser A, Simon I and Barton GJ (1996) [8955352]
  Conservation of amino acids in multiple alignments: aspartic acid has unexpected conservation.
  FEBS Lett 397, 225-9
86.   Tusnády GE, Tusnády G and Simon I (1995) [8532662]
  Independence divergence-generated binary trees of amino acids.
  Protein Eng 8, 417-23
87.   Rani M, Mitra C, Cserző M and Simon I (1995) [-100002657]
  Proteins as special subsets of polypeptides.
  J Biosciences 20, 579-590
88.   Simon I and Pongor S (1995) [-100002656]
  Repetitive elements of protein sequences as fossils of early life.
  J Biol Phys 20, 331-334
89.   Fiser A, Tusnády GE and Simon I (1994) [7696222]
  Chaos game representation of protein structures.
  J Mol Graph 12, 302-4, 295
90.   Tudos E, Fiser A and Simon I (1994) [8200741]
  Different Sequence Environments of Amino-acid-residues Involved And Not Involved In Long-range Interactions In Proteins
  Int J Pept Protein Res 43, 205-8
91.   Cserző M, Bernassau JM, Simon I and Maigret B (1994) [7966267]
  New alignment strategy for transmembrane proteins.
  J Mol Biol 243, 388-96
92.   Simon I (1993) [8257802]
  Predictions from the regularities of the primary structure of proteins.
  Pept Res. 6, 260-2
93.   Wolf RM, Francotte E, Simon I, Glasser L and Scheraga HA (1992) [-100002706]
  Computation of low energy crystalline arrangements of cellulose triacetate
  Macromolecules 25, 709-720
94.   Fiser A, Cserző M, Tüdős É and Simon I (1992) [1633841]
  Different sequence environments of cysteines and half cystines in proteins. Application to predict disulfide forming residues.
  FEBS Lett 302, 117-20
95.   Simon I, Glasser L and Scheraga HA (1991) [2023916]
  Calculation of Protein Conformation as An Assembly of Stable Overlapping Segments - Application to Bovine Pancreatic Trypsin-inhibitor
  P Natl Acad Sci Usa 88, 3661-5
96.   Tüdős E, Cserző M and Simon I (1990) [2279846]
  Predicting isomorphic residue replacements for protein design.
  Int J Pept Protein Res 36, 236-9
97.   Simon I and Cserző M (1990) [2339467]
  Rapid evolution of the amino acid composition of proteins.
  Trends Biochem Sci 15, 135-6
98.   Vígh R, Cser L, Kilár F and Simon I (1989) [2817894]
  Different segmental flexibility of human serum transferrin and lactoferrin.
  Arch Biochem Biophys 275, 181-4
99.   Cserző M and Simon I (1989) [2599756]
  Regularities in the primary structure of proteins.
  Int J Pept Protein Res 34, 184-95
100.   Simon I and Cserző M (1989) [-100002705]
  Remarks on the article ‘Genetic code preferentially conserves long-range interactions among the amino acids’ by V. Sitaramam
  FEBS Lett 253, 287
101.   Simon I, Scheraga HA and Manley RSJ (1988) [-100002703]
  Structure of cellulose. 1. Low-energy conformations of single chains.
  Macromolecules 21, 983-990
102.   Simon I, Glasser L, Scheraga HA and Manley RSJ (1988) [-100002704]
  Structure of cellulose. 2. Low-energy crystalline arrangements.
  Macromolecules 21, 990-998
103.   Vonderviszt F and Simon I (1986) [3767948]
  A possible way for prediction of domain boundaries in globular proteins from amino acid sequence.
  Biochem Bioph Res Co 139, 11-7
104.   Vonderviszt F, Mátrai G and Simon I (1986) [3733319]
  Characteristic Sequential Residue Environment of Amino-acids In Proteins
  Int J Pept Protein Res 27, 483-92
105.   Simon I (1986) [3626582]
  Proteins as General Crystals
  J Theor Biol 123, 121-4
106.   Kilár F, Simon I, Lakatos S, Vonderviszt F, Medgyesi GA and Závodszky P (1985) [3971974]
  Conformation of human IgG subclasses in solution. Small-angle X-ray scattering and hydrodynamic studies.
  Eur J Biochem 147, 17-25
107.   Náray-Szabó G, Kramer G and Simon I (1985) [2421107]
  Electrostatic effect of trypsin binding on the hydrogen exchange rate of bovine pancreatic trypsin inhibitor beta-sheet NH\'s.
  J Theor Biol 117, 505-8
108.   Simon I (1985) [4033149]
  Investigation of Protein Refolding - a Special Feature of Native Structure Responsible for Refolding Ability
  J Theor Biol 113, 703-10
109.   Kilár F and Simon I (1985) [4074838]
  The effect of iron binding on the conformation of transferrin. A small angle x-ray scattering study.
  Biophys J 48, 799-802
110.   Simon I, Tüchsen E and Woodward C (1984) [-100002702]
  Effect of trypsin binding on the hydrogen exchange kinetics of bovine pancreatic trypsin inhibitor beta-sheet NHs
  Biochemistry-us 23, 2064-8
111.   Woodward C, Simon I and Tüchsen E (1982) [6757714]
  Hydrogen exchange and the dynamic structure of proteins.
  Mol Cell Biochem 48, 135-60
112.   Lakatos S, Simon I and Patthy L (1981) [6753445]
  Coenzyme induced changes in the interdimeric contact surface of D-glyceraldehyde-3-phosphate-dehydrogenase.
  Acta Biochim Biophys Acad Sci Hung 16, 145-9
113.   Simon I (1981) [7300375]
  Possible Mechanism for the Dynamic Stabilization of Protein-structure
  J Theor Biol 90, 487-93
114.   Simon I and Asbóth B (1980) [7382523]
  Subunit contact surface--an additional argument in favour of continuous folding during biosynthesis of proteins.
  J Theor Biol 82, 685-8
115.   Simon I (1979) [231710]
  Investigation of Protein Folding - Uneven Distribution of Point Mutations Along Polypeptide-chains
  J Theor Biol 81, 247-58
116.   Simon I, Némethy G and Scheraga HA (1978) [-100002698]
  Conformational energy calculations of the effect of sequence variation on the conformation of two tetrapeptides.
  Macromolecules 11, 797-804
117.   Móra S, Simon I and Elődi P (1974) [4427592]
  Studies on the active center of pancreatic amylase. I. Binding of beta-cyclodextrin.
  Mol Cell Biochem 4, 205-9
118.   Simon I, Móra S and Elődi P (1974) [4473700]
  Studies on the active center of pancreatic amylase. II. Small angle x-ray scattering investigations.
  Mol Cell Biochem 4, 211-6
119.   Simon I (1972) [-100002701]
  Kisszögő röntgenszórás alkalmazása a fehérjeszerkezet kutatásában.
  MTA Biol Oszt Közl 15, 375-381
120.   Simon I (1972) [4343809]
  Study of the position of NAD and its effect on the conformation of D-glyceraldehyde-3-phosphate dehydrogenase by small-angle x-ray scattering.
  Eur J Biochem 30, 184-9
121.   Simon I (1971) [-100002694]
  Determination of small alternations in the radius of gyration by small-angle X-ray scattering,
  J Appl Crystallogr 4, 317-318

Books or book chapters

1.   Tusnády GE and Simon I (2010)
  Shedding light on transmembrane topology
  Protein Structure Prediction: Method and Algorithms , 107-136
2.   Tusnády GE and Simon I (2010)
  Resource for structure related information on transmembrane proteins
  Structural Bioinformatics of Membrane Proteins , 45-59
3.   Fuxreiter M, Osman R and Simon I (2004)
  Computational approaches to restriction endonucleases.
  The Role of Chemistry in the Evolution of Molecular Medicine , 469-480
4.   Tusnády GE and Simon I (2002)
  Conventional and non-conventional use of prediction methods.
  Research developments in protein folding, stability and design , 105-122
5.   Rajnavolgyi E, Simon A, Nagy N, Dosztanyi Z, Simon I, Falk K and Klein E (1998)
  A repetitive of the Epstein-Barr virus nuclear antigen-6 encompasses overlapping regions which bind to various HLA-DR molecules.
  Peptides 98. , 548-549
6.   Simon I (1995)
  General crystal in prebiotic context.
  Self-Organisation of the Macromolecules of Life , 139-143
7.   Simon I and Pongor S (1995)
  Chemical Evolution: Structure and Model of the First Cell.
  ,
8.   Zavodszky P, Vonderviszt F, Lakatos S, Kilar F, Simon I, Torok J, Sziva D and Sarvari M (1986)
  Domain sructure and signal transduction within antibody molecules
  Multidomain proteins 157, 157-173