Center of Excellence of the European Union
 
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Recent publications

Articles

1.   Kozma D, Simon I and Tusnády GE (2013) [23203988]
  PDBTM: Protein Data Bank of transmembrane proteins after 8 years.
  Nucleic Acids Res 41, D524-9
2.   Kozma D, Simon I and Tusnády GE (2012) [22669913]
  CMWeb: an interactive on-line tool for analysing residue-residue contacts and contact prediction methods.
  Nucleic Acids Res 40, W329-33
3.   Lefever S, Hoebeeck J, Pattyn F, Tusnády GE, De Paepe A, Speleman F, Arányi T and Vandesompele J (2010) [20160504]
  methGraph: A genome visualization tool for PCR-based methylation assays.
  Epigenetics 5, 159-63
4.   Tusnády GE and Simon I (2010) [20887261]
  Topology prediction of helical transmembrane proteins: how far have we reached?
  Curr Protein Pept Sc 11, 550-61
5.   Farrell KB, Tusnady GE and Eiden MV (2009) [19717569]
  A new structural arrangement of the extracellular regions of the phosphate transporter SLC20A1, the receptor for gibbon ape Leukemia virus.
  J Biol Chem 284, 29979-87
6.   Tusnády GE, Kalmár L and Simon I (2008) [17921502]
  TOPDB: topology data bank of transmembrane proteins.
  Nucleic Acids Res 36, D234-9
7.   Tusnády GE, Kalmár L, Hegyi H, Tompa P and Simon I (2008) [18434342]
  TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
  Bioinformatics 24, 1469-70
8.   Arányi T and Tusnády GE (2007) [17951807]
  BiSearch: ePCR tool for native or bisulfite-treated genomic template.
  Methods Mol Biol 402, 385-402
9.   Tusnády GE, Sarkadi B, Simon I and Váradi A (2006) [16337630]
  Membrane topology of human ABC proteins.
  FEBS Lett 580, 1017-22
10.   Arányi T, Váradi A, Simon I and Tusnády GE (2006) [17022803]
  The BiSearch web server.
  BMC Bioinformatics 7, 431
11.   Tusnády GE, Simon I, Váradi A and Arányi T (2005) [15653630]
  BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes.
  Nucleic Acids Res 33, e9
12.   Tusnády GE, Dosztányi Z and Simon I (2005) [15608195]
  PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank.
  Nucleic Acids Res 33, D275-8
13.   Magyar C, Gromiha MM, Pujadas G, Tusnády GE and Simon I (2005) [15980477]
  SRide: a server for identifying stabilizing residues in proteins.
  Nucleic Acids Res 33, W303-5
14.   Tusnády GE, Dosztányi Z and Simon I (2005) [15539454]
  TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
  Bioinformatics 21, 1276-7
15.   Tusnády GE, Dosztányi Z and Simon I (2004) [15180935]
  Transmembrane proteins in the Protein Data Bank: identification and classification.
  Bioinformatics 20, 2964-72
16.   Gardy JL, Spencer C, Wang K, Ester M, Tusnády GE, Simon I, Hua S, deFays K, Lambert C, Nakai K and Brinkman FS (2003) [12824378]
  PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria.
  Nucleic Acids Res 31, 3613-7
17.   Dosztányi Z, Magyar C, Tusnády GE and Simon I (2003) [12724305]
  SCide: identification of stabilization centers in proteins.
  Bioinformatics 19, 899-900
18.   Dosztányi Z, Magyar C, Tusnády GE, Cserző M, Fiser A and Simon I (2003) [12824327]
  Servers for sequence-structure relationship analysis and prediction.
  Nucleic Acids Res 31, 3359-63
19.   Tompa P, Tusnády GE, Friedrich P and Simon I (2002) [11916832]
  The role of dimerization in prion replication.
  Biophys J 82, 1711-8
20.   Simon I, Fiser A and Tusnády GE (2001) [11690649]
  Predicting protein conformation by statistical methods.
  Biochimica Et Biophysica Acta-protein Structure And Molecular Enzymology 1549, 123-36
21.   Tompa P, Tusnády GE, Cserző M and Simon I (2001) [11287647]
  Prion protein: evolution caught en route.
  P Natl Acad Sci Usa 98, 4431-6
22.   Tusnády GE and Simon I (2001) [11590105]
  The HMMTOP transmembrane topology prediction server.
  Bioinformatics 17, 849-50
23.   Tusnády GE and Simon I (2001) [11277724]
  Topology of membrane proteins.
  J Chem Inf Comput Sci 41, 364-8
24.   Bakos É, Evers R, Calenda G, Tusnády GE, Szakács G, Váradi A and Sarkadi B (2000) [11082039]
  Characterization of the amino-terminal regions in the human multidrug resistance protein (MRP1).
  J Cell Sci 113 (Pt 2), 4451-61
25.   Bakos É, Evers R, Szakács G, Tusnády GE, Welker E, Szabó K, de Haas M, van Deemter L, Borst P, Váradi A and Sarkadi B (1998) [9822694]
  Functional multidrug resistance protein (MRP1) lacking the N-terminal transmembrane domain.
  J Biol Chem 273, 32167-75
26.   Váradi A, Tusnády GE, Bakos É and Sarkadi B (1998) [19002784]
  Membrane topology of human MRP homologs
  Cytotechnology 27, 71-79
27.   Tusnády GE and Simon I (1998) [9769220]
  Principles governing amino acid composition of integral membrane proteins: application to topology prediction.
  J Mol Biol 283, 489-506
28.   Tusnády GE and Váradi A (1998) [9464238]
  Short MRP may not be short.
  Biochem Bioph Res Co 242, 465-6
29.   Tusnády GE, Bakos É, Váradi A and Sarkadi B (1997) [9013845]
  Membrane topology distinguishes a subfamily of the ATP-binding cassette (ABC) transporters.
  FEBS Lett 402, 1-3
30.   Bakos É, Hegedűs T, Holló Z, Welker E, Tusnády GE, Zaman GJ, Flens MJ, Váradi A and Sarkadi B (1996) [8647833]
  Membrane topology and glycosylation of the human multidrug resistance-associated protein.
  J Biol Chem 271, 12322-6
31.   Tusnády GE, Tusnády G and Simon I (1995) [8532662]
  Independence divergence-generated binary trees of amino acids.
  Protein Eng 8, 417-23
32.   Fiser A, Tusnády GE and Simon I (1994) [7696222]
  Chaos game representation of protein structures.
  J Mol Graph 12, 302-4, 295

Books or book chapters

1.   Tusnády GE and Simon I (2010)
  Shedding light on transmembrane topology
  Protein Structure Prediction: Method and Algorithms , 107-136
2.   Tusnády GE and Simon I (2010)
  Resource for structure related information on transmembrane proteins
  Structural Bioinformatics of Membrane Proteins , 45-59
3.   Váradi A, Tusnády GE and Sarkadi B (2002)
  Membrane topology of human ABC proteins.
  The book of ABC proteins , 37-47
4.   Tusnády GE and Simon I (2002)
  Conventional and non-conventional use of prediction methods.
  Research developments in protein folding, stability and design , 105-122
5.   Váradi A, Tusnády GE, Bakos É and Sarkadi B (1998)
  Membrane topology of the human multidrug resistance-associated protein (MRP) and its homologs.
  Multiple drug resistance in cancer: molecular, cellular and clinical aspects. , 71-80