Center of Excellence of the European Union
 
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Recent publications

Articles

1.   Oates ME, Romero P, Ishida T, Ghalwash M, Mizianty MJ, Xue B, Dosztányi Z, Uversky VN, Obradovic Z, Kurgan L, Dunker AK and Gough J (2013) [23203878]
  D2P2: database of disordered protein predictions.
  Nucleic Acids Res 41, D508-D516
2.   Mészáros B, Dosztányi Z and Simon I (2012) [23056474]
  Disordered Binding Regions and Linear Motifs-Bridging the Gap between Two Models of Molecular Recognition.
  PLoS ONE 7, e46829
3.   Pajkos M, Mészáros B, Simon I and Dosztányi Z (2012) [21918772]
  Is there a biological cost of protein disorder? Analysis of cancer-associated mutations.
  Mol Biosyst 8, 296-307
4.   Mészáros B, Tóth J, Vértessy BG, Dosztányi Z and Simon I (2011) [21814507]
  Proteins with Complex Architecture as Potential Targets for Drug Design: A Case Study of Mycobacterium tuberculosis.
  PLoS Comput Biol 7, e1002118
5.   Mészáros B, Simon I and Dosztányi Z (2011) [21572179]
  The expanding view of protein-protein interactions: complexes involving intrinsically disordered proteins.
  Phys Biol 8, 035003
6.   Dosztányi Z, Mészáros B and Simon I (2010) [20007729]
  Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins.
  Brief Bioinform 11, 225-243
7.   Dosztányi Z, Mészáros B and Simon I (2009) [19717576]
  ANCHOR: web server for predicting protein binding regions in disordered proteins.
  Bioinformatics 25, 2745-6
8.   Mészáros B, Simon I and Dosztányi Z (2009) [19412530]
  Prediction of protein binding regions in disordered proteins.
  PLoS Comput Biol 5, e1000376
9.   Dosztányi Z and Tompa P (2008) [18542859]
  Prediction of protein disorder.
  Methods Mol Biol 426, 103-15
10.   Csosz E, Bagossi P, Nagy Z, Dosztányi Z, Simon I and Fésüs L (2008) [18761350]
  Substrate Preference of Transglutaminase 2 Revealed by Logistic Regression Analysis and Intrinsic Disorder Examination.
  J Mol Biol 383, 390-402
11.   Mészáros B, Tompa P, Simon I and Dosztányi Z (2007) [17681540]
  Molecular principles of the interactions of disordered proteins.
  J Mol Biol 372, 549-61
12.   Dosztányi Z, Sándor M, Tompa P and Simon I (2007) [17430197]
  Prediction of protein disorder at the domain level.
  Curr Protein Pept Sc 8, 161-71
13.   Csizmók V, Dosztányi Z, Simon I and Tompa P (2007) [17430198]
  Towards proteomic approaches for the identification of structural disorder.
  Curr Protein Pept Sc 8, 173-9
14.   Dosztányi Z, Chen J, Dunker AK, Simon I and Tompa P (2006) [17081050]
  Disorder and sequence repeats in hub proteins and their implications for network evolution.
  J Proteome Res 5, 2985-95
15.   Tompa P, Dosztányi Z and Simon I (2006) [16889422]
  Prevalent structural disorder in E. coli and S. cerevisiae proteomes.
  J Proteome Res 5, 1996-2000
16.   Robinson A, Wu PS, Harrop SJ, Schaeffer PM, Dosztányi Z, Gillings MR, Holmes AJ, Nevalainen KM, Stokes HW, Otting G, Dixon NE, Curmi PM and Mabbutt BC (2005) [15713477]
  Integron-associated mobile gene cassettes code for folded proteins: the structure of Bal32a, a new member of the adaptable alpha+beta barrel family.
  J Mol Biol 346, 1229-41
17.   Dosztányi Z, Csizmók V, Tompa P and Simon I (2005) [15955779]
  IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.
  Bioinformatics 21, 3433-4
18.   Tusnády GE, Dosztányi Z and Simon I (2005) [15608195]
  PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank.
  Nucleic Acids Res 33, D275-8
19.   Dosztányi Z, Csizmók V, Tompa P and Simon I (2005) [15769473]
  The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.
  J Mol Biol 347, 827-39
20.   Tusnády GE, Dosztányi Z and Simon I (2005) [15539454]
  TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
  Bioinformatics 21, 1276-7
21.   Tüdős É, Fiser A, Simon Á, Dosztányi Z, Fuxreiter M, Magyar C and Simon I (2004) [15032510]
  Noncovalent cross-links in context with other structural and functional elements of proteins.
  J Chem Inf Comput Sci 44, 347-51
22.   Tusnády GE, Dosztányi Z and Simon I (2004) [15180935]
  Transmembrane proteins in the Protein Data Bank: identification and classification.
  Bioinformatics 20, 2964-72
23.   Dosztányi Z, Magyar C, Tusnády GE and Simon I (2003) [12724305]
  SCide: identification of stabilization centers in proteins.
  Bioinformatics 19, 899-900
24.   Dosztányi Z, Magyar C, Tusnády GE, Cserző M, Fiser A and Simon I (2003) [12824327]
  Servers for sequence-structure relationship analysis and prediction.
  Nucleic Acids Res 31, 3359-63
25.   Dosztányi Z and Torda AE (2001) [11524370]
  Amino acid similarity matrices based on force fields.
  Bioinformatics 17, 686-99
26.   Simon Á, Dosztányi Z, Magyar C, Szirtes G, Rajnavölgyi E and Simon I (2001) [-100002666]
  Stabilization centers and protein stability.
  Theor Chem Acc 106, 121-127
27.   Rajnavölgyi É, Nagy N, Thuresson B, Dosztányi Z, Simon Á, Simon I, Karr RW, Ernberg I, Klein E and Falk KI (2000) [10700463]
  A repetitive sequence of Epstein-Barr virus nuclear antigen 6 comprises overlapping T cell epitopes which induce HLA-DR-restricted CD4(+) T lymphocytes.
  Int Immunol 12, 281-93
28.   Simon Á, Dosztányi Z, Rajnavölgyi É and Simon I (2000) [11053110]
  Function-related regulation of the stability of MHC proteins.
  Biophys J 79, 2305-13
29.   Dosztányi Z and Simon I (1999) [-100002665]
  Stabilization centers in various proteins.
  Theor Chem Acc 101, 27-32
30.   Gugolya Z, Dosztányi Z and Simon I (1997) [9094738]
  Interresidue interactions in protein classes.
  Proteins 27, 360-6
31.   Dosztányi Z, Fiser A and Simon I (1997) [9325115]
  Stabilization centers in proteins: identification, characterization and predictions.
  J Mol Biol 272, 597-612
32.   Fiser A, Dosztányi Z and Simon I (1997) [9183535]
  The role of long-range interactions in defining the secondary structure of proteins is overestimated.
  Comput Appl Biosci. 13, 297-301

Books or book chapters

1.   Rajnavolgyi E, Simon A, Nagy N, Dosztanyi Z, Simon I, Falk K and Klein E (1998)
  A repetitive of the Epstein-Barr virus nuclear antigen-6 encompasses overlapping regions which bind to various HLA-DR molecules.
  Peptides 98. , 548-549