| BiSearch |
BiSearch is a primer-design algorithm for DNA
sequences. It may be used for both bisulfite converted as well as for original not modified sequences. You can search various genomes with the designed primers to avoid non-specific PCR products. |
| DAS-TMfilter |
DAS-TMfilter predicts transmembrane segments by "Dense Alignment Surface" method
(updated and modified version of the original DAS).
|
| DNAbind |
DNAbind server predicts whether a protein is DNA-binding from its structure and/or sequence.
|
| HMMTOP |
HMMTOP is an automatic prediction server for
predicting topology and localization of transmembrane
helices in transmembrane proteins. |
| IUPred |
Prediction of Intrinsically Unstructured Proteins. Intrinsically unstructured/disordered proteins have no single well-defined tertiary structure in their native, functional state. Our server recognizes such regions from the amino acid sequence based on the estimated pairwise energy content. |
| PDB_TM |
PDB_TM is the first comprehensive and up-to-date transmembrane
protein selection of the Protein Data Bank (PDB).
|
| SCPRED |
SCPRED can predict stabilization center
residues in protein with unknown structure. |
| SCIDE |
SCIDE can identify the stabilization center
residues in known protein structures.
|
| SRide |
SRide can identify the stabilizing residues in
proteins.
|
| TMDET |
TMDET is an online tool for the detection of the transmembrane regions
of membrane proteins by using their 3D structure only.
|
| TOPDB |
The Topology Data Bank of Transmembrane Proteins (TOPDB) is currently
the most complete and comprehensive collection of transmembrane protein
datasets containing experimentally derived topology information.
|